rs46733668 SNP Detail

Summary

• ID
  rs46733668
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72215038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCAATT TTTATTGATT
  TCTCTCACTT CTTGATGGTA ATACTGCAAT TTTAGAACTT CTAAGCATGT GTTGGCTTTA
  CAGCTATAAA TTAAATTTGC ATTTCTTGTA CTTTTAAAAC ATTGTATTAA AATTTGCCAT
  CCACATTAGG TGATCAGTTT TAGTTGGGCA AATCGGAACA AACAAGCTCT ATTTGCTTGC
  K
  TTCAGTTTTG ATAGATGATA ATTTTGTCCA ACTAGTAATT ACTTTTGTGT TTTTAACTTG
  TTAATGATTT AACCATCAAG CAATATTTAT CTTAATAATA CAGATATGCT GTTAAATTGC
  TCTCATACAT GTGTGTAAAA CAGTAGTTAT AACTATGTCC AATAAATGTA ATATTATTTC
  TTCAATTTTA ACAGGGTTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61419716	NES16806286	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46733668					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61419716	NES16806286	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72215038 () rs orientation: forward

Symbol	Name	Function Class
Tssr85977	transcription start site region 85977	1880 bp downstream
Tssr85978	transcription start site region 85978	1077 bp downstream
Zfp280d	zinc finger protein 280D	within coordinates