rs46738666 SNP Detail

Summary

• ID
  rs46738666
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33152826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGTCTC AGTAACCTGG
  CAAAGAACCA GCCTCCCTGT CCAGATGCAA AGAGCCAGAA GGTTCCCGTT GATCTTATTG
  TTCTCTGAGA CGCAGAGAAG GTCCCAAGGG TGGCACAGGG GGAGTAGGAG CTTGAGCTTT
  GGTGTTGGGC CTGCCTGTGA TCTTGCTCCT CCTGACCCTT GCTTTGTGAC TCAAAGCAGA
  W
  TCCTTAACTG TTCCCCATCT GAAAACAGTG TGAGGAACTG ATCAGGGGGA CCAAAGACGA
  TCCTTTGTGT AAGTTCTCCG TGTGACAGAT GTTCCCAACA GTGATTGCAT GCTACATCGA
  CTCGTCGAGC CTGGAACAGT CAGGATCTCC CTGTTTAAAG CTGAGGCCTT TCCACTGTCT
  GTAAGTGGAA ATAAACACGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137582130	ENSMUSSNP4756273	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46738666					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33152826 () rs orientation: forward

Symbol	Name	Function Class
Gm59430	predicted gene, 59430	within coordinates
Rr464869	regulatory region 464869	104 bp distal
Rr464870	regulatory region 464870	within coordinates