rs46739231 SNP Detail

Summary

• ID
  rs46739231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41520701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTGTGC AGCACCACAG
  GCGGCAGACA GATCGTGGAG AGATAGTTTG CCTTCCAGAA TCATACCTGG CGTTTGCCTT
  CTAGGAGATT TGTTTCGCAG GTCCACAGGT CATACAGAAC CGCAAATCTG TCCACGTTTG
  CATGGGCCCA GCCAAGGAGC TGGCTGCCCT CTGATCTGCA CTCTCCTCTG TGACCTGGGA
  Y
  GAGATCAGTG GGAATGGTTA GAGACACGCC TTCGAAAAGT GCCCTGTCTC TGAAGAACTC
  AAGAGACAGT TAGCCCCATC TCTGCAGTAG ATCTGAGCCA GTGACTAGGA CTCCCCAAAG
  GGAACTGAAG AGCCACCTGC AAAGGACCAG GCCTGAAGTC CACACATTTA GTAATTCTTT
  TTTTTTTTTT TTTTTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52248951	NES15256735	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46739231					SNP	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52248951	NES15256735	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41520701 () rs orientation: forward

Symbol	Name	Function Class
Ccdc162	coiled-coil domain containing 162	within coordinates