rs46739709 SNP Detail

Summary

• ID
  rs46739709
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68830739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTAGTGAG TACAAGGCAG TGACAGCGAC TATCCAGAGA
  AGTATCTGGG TGCTTTCCAT GACCCTGTGC CTCTTATAGA GTTGTCAAGC TGCTCGTTTT
  M
  TAAGCCAAAA CCCAGGAAGG TCCCAAACAG CCCACTACAT ATTTTTTGAG GGTGTCTTGG
  TTTTAGGACA AGAATAAAAC TTGAACTATG TCTTGCTAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss62443682	NES17255352	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	A	A	A	A	A	C	C
ss139660930	ENSMUSSNP2171505	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46739709					SNP	A	A	C	C	C	C	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62443682	NES17255352	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68830739 () rs orientation: forward

Symbol	Name	Function Class
Rr296117	regulatory region 296117	126 bp proximal
Tssr126359	transcription start site region 126359	1004 bp upstream