rs46741022 SNP Detail

Summary

• ID
  rs46741022
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG AATTTAAGCT CAAATAACTA
  C
  ACTTAAACCA TTCATGGGAA CTCTA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145809566	ENSMUSSNP5578003	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46741022					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765824 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			540 bp upstream
Cpgi904	CpG island 904			456 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			558 bp upstream
Rr421284	regulatory region 421284			467 bp distal
Rr421285	regulatory region 421285			127 bp proximal
Rr421286	regulatory region 421286			554 bp proximal
Rr421287	regulatory region 421287			716 bp proximal
Rr421288	regulatory region 421288			1048 bp proximal
Rr421289	regulatory region 421289			1123 bp proximal
Rr421290	regulatory region 421290			1509 bp proximal
Rr421291	regulatory region 421291			1565 bp proximal
Tssr9581	transcription start site region 9581			1403 bp upstream
Tssr14474	transcription start site region 14474			412 bp upstream
Tssr14475	transcription start site region 14475			528 bp downstream
Tssr14476	transcription start site region 14476			557 bp downstream
Tssr14477	transcription start site region 14477			1279 bp downstream
Tssr14478	transcription start site region 14478			1299 bp downstream
Tssr14479	transcription start site region 14479			1374 bp downstream
Tssr14480	transcription start site region 14480			1772 bp downstream