rs46743025 SNP Detail

Summary

• ID
  rs46743025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84353189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCAAAGT TGTCATTGGT
  CATAGTAGTA CAAAAATAGA AGACTTCCTG AATACTGAAC ATGCAAACAC CAAATACCAT
  TACTCTCTAA GTCCATTAGG TAACAGTATG TCTACCTCTA AGGGACTATG AGGCTCAAAT
  GACCCACAAG AAATATGCCC CCTCTCTCCG TTAGGCCCAT GAGTGAGTTG ACACAGAAGA
  R
  CATTCATTCA GAATGCTTAC TCAATAAATG TGTTATGCCC AGGACAATCA CAAACGCTTT
  CCTTAAACTA CCTAGGCCAA TCCTAATCTC TATCCATTGC TTAACCACAC CACTGTTTTC
  TAGTCCTAGA CAAAGGAACA TTGTAACCAA GATGGACTGT TTTACTGTGC AAGCAGAACA
  TAAGGCAGAA GCTTATTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60500627	NES16526915	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	G		A	A	A		A
ss325260785	CHEV_16_84556546	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46743025					SNP	A	A	G	A	G	A	A	G	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500627	NES16526915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84353189 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	1981 bp upstream
Rr518505	regulatory region 518505	1952 bp proximal
Tssr139145	transcription start site region 139145	848 bp upstream