rs46744481 SNP Detail

Summary

• ID
  rs46744481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20986202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCAGC AGACAATGCT
  GGGAATAGAG CCAGTTGTCT TACCCCAGGG TCAAATGATC CCATGCAAAT GTAGCAACTT
  CTTACTCTGA TAGATCTCTA TCAGTGGGAA AGCAGGATTT AGTAGCCATT CTGGGCGGAT
  ATGTGTGTGT GCTCGTCAGT TTGACAGGAG TTAGGATCAT CAGGGAGAAA GGAGCCTCGG
  Y
  TGAGCAACTG CCCCTGTGAG ATCCAGCCGT AAGGCATTTT CTCAACTAGT GATCAATGTG
  AGAGGGCCCC GACCCATTGT GAGTGGTGCC ATCTCTGGGT TGGTGGTCCT GGGTCCCGGG
  TTATAAGAAA GCAGGCTGAG CAAGCCAGGA GGATCAAGCC TTACAGTGGT ACCCCTCCAT
  GGCCTCTGCA TCAGCTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148726303	ENSMUSSNP2761491	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46744481					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20986202 () rs orientation: forward

Symbol	Name	Function Class
Gm24171	predicted gene, 24171	438 bp upstream
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Tssr6058	transcription start site region 6058	1862 bp upstream
Tssr6059	transcription start site region 6059	1878 bp upstream