rs46745181 SNP Detail

Summary

• ID
  rs46745181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57390682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGGAG AATATGGAAA
  CTCTGGCATC ATGGATGAAG TGGATGAGCT CAGGAAGCGC GTGCTGGACA TGGAAGGGAA
  AGATGAAGAG CTCATAAAAA TGGAGGAGCA GTGCAGAGAC CTCAATAAGA GGCTAGAGAA
  AGAGACAGTA CAGAGTAAAG ACTTCAAACT AGAGGTTGAC AAACTTAGTG TAAGGATCAC
  R
  GCTCTGGAAA AATTAGAAGA TGCTTTAGAC AAAAGCAAAC AAGAATGCTA CTCTCTGAAA
  TGCAATTTAG AAAAAGAAAA GATGACCACA AAGCAATTGT CTGAAGAGCT GGAGAGTTTA
  AATGCCAGAA TCAAAGAGCT AGAAGCCATT GAAAGTCGGC TAGAAAAGAC AGAAATCACA
  CTAAAGGATG ATTTAACTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60466749	NES16455356	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G	A	A	A	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46745181					SNP	A	A	G	A	G	G	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60466749	NES16455356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57390682 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	within coordinates
Tssr138840	transcription start site region 138840	595 bp downstream
Tssr138841	transcription start site region 138841	540 bp downstream
Tssr138842	transcription start site region 138842	453 bp downstream
Tssr138843	transcription start site region 138843	351 bp upstream
Tssr138844	transcription start site region 138844	1732 bp upstream
Tssr138845	transcription start site region 138845	1847 bp upstream
Tssr138846	transcription start site region 138846	1951 bp upstream
Tssr138847	transcription start site region 138847	1985 bp upstream