rs46745880 SNP Detail

Summary

• ID
  rs46745880
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GTCACATTTG TAGTGTTCCT
  C
  CTTTTAAGAT AAAGGAAAGC TATTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss137401605	ENSMUSSNP1917983	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323938302	CHEV_12_25781423	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46745880					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Cpgi4501	CpG island 4501	1773 bp proximal
Gm59395	predicted gene, 59395	within coordinates
Id2	inhibitor of DNA binding 2	466 bp upstream
Rr403250	regulatory region 403250	195 bp downstream
Tssr112979	transcription start site region 112979	819 bp downstream
Tssr112980	transcription start site region 112980	109 bp downstream
Tssr112981	transcription start site region 112981	71 bp downstream
Tssr112982	transcription start site region 112982	870 bp upstream
Tssr115884	transcription start site region 115884	765 bp upstream
Tssr115885	transcription start site region 115885	462 bp upstream
Tssr115886	transcription start site region 115886	681 bp downstream