rs46746209 SNP Detail

Summary

• ID
  rs46746209
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143610484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTCTTGGG GAGCCACATG GGAACTGACG CCCACAGTTG
  TCTTCTGACC TCCTTAGGCA AGCAGCAACA AGCTTGTGCA CACACACAAT CTTAAAAAGT
  M
  ACCAAGAATA AGCAGTTATT TTGTACATTC TGGTCTAAAC AGTGTAAAGA CTGCTATCAT
  TATGGATTTT TCTTGAATAA TAACACATGC TTTCAAATTT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852264	NES15998526	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46746209					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852264	NES15998526	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143610484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16995	CpG island 16995	1558 bp distal
Cyth3	cytohesin 3	within coordinates
Rr124733	regulatory region 124733	within coordinates
Rr124734	regulatory region 124734	316 bp proximal