rs46749500 SNP Detail

Summary

• ID
  rs46749500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48769036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACGTGG CCTCTTCAGT
  CAAGCATTGG AGAAAGAGAT AGTTCTCGCT ACTCCCATTT GTTTTTCCCA CCTCTGTAAT
  TCAAGTGAGA AACTCCCTTA ATGGTATGCC CAGAGATTTG TCCCTGTGGT GATTCTAGAG
  CCTGTCAAGA CGACAGCGTG AACGTCACAG TCCTCCCGGC CCACTCACTT CTTGACCCTC
  R
  AAGTCACTCT CTCCCTCACC TGGTCCTCCC TCTATGCCTA TTTGGAGAGG AGATTGCATC
  ACCCACATAG AGACCCCTTA GATGACAGGA GCCTGGTGGT AGGCACCTTG GGATCTATGC
  CTTTCTGGTG CCTATGTGTA GATCTCTGCC ACCATCTCCC TCCGCAGTCT CTACACCTGC
  GTTCTGGAGG CCCCCCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62766551	NES17348252	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46749500					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62766551	NES17348252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48769036 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370279	regulatory region 370279			103 bp upstream
Rr528302	regulatory region 528302			1487 bp distal
Rr528303	regulatory region 528303			312 bp distal
Tssr145120	transcription start site region 145120			347 bp upstream
Unc5cl	unc-5 family C-terminal like			Intron
				Noncoding-Transcript-Variant