rs46749780 SNP Detail

Summary

• ID
  rs46749780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992488 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A AACCGGGATA AGTATACCTT TGTGGGCCAT AGTAAGATCA
  TGGCCAGTAC CTTTACCGGT ACATTCCAAT TCTTCTACCT TGCCTTTATT TTTTGCAACG
  R
  AATGTTATTT GGATGCGCCT TGTGCACGAC AAACTCCTCA AGAGCCACGG GTGTATAATA
  GTACTAGTTT TCATTTGAAT TATACACTAT GCTTTGTGCA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132065144	ENSMUSSNP6243868	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss139262414	ENSMUSSNP3892303	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss148195716	ENSMUSSNP3942646	ENSEMBL	ENSEMBL_Sanger	r	SNP			T
ss148732369	ENSMUSSNP4064439	ENSEMBL	ENSEMBL_Sanger	r	SNP	C		C
ss149061463	ENSMUSSNP339611	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	C	C
ss149151546	ENSMUSSNP1118182	ENSEMBL	ENSEMBL_Sanger	r	SNP			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46749780					SNP	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147047153	ENSMUSSNP3588959	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992488 () rs orientation: reverse

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	within coordinates
Gm69636	predicted gene, 69636	within coordinates