rs46750842 SNP Detail

Summary

• ID
  rs46750842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65052039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATAATG CATATCAAAT
  TCAAGTTTAT TTCTAAAATT AAGCAAGTTG GATACAGCGT AAGTATTTAG CAGTTTTTCA
  CCTGTCAGTG AATTTGGTTT TCAGCCTCTT GATTAATTCC TAGCAGTACT GGCACGAATC
  CCTTTATTTA CGTAGACTTT AGGTTCAACC CTCAACTCTG GCTCTTGGGA GGAATGTTCT
  Y
  TTTTGTCTAT ATGGTAAACC TATCAACATA TGCATGCATC TCAAGCAGAG GACTGTTCAA
  GTCCCCTTTC AACTCCACAC CCCCAACCGC TAATCCTTGC AAGATGGCTG CTCACTCCCT
  TCCCTGTCAA CACTCAAATT CTAGTTTACT TCAGTGACTC AGATGGAAAC AGACCATACA
  AATAAAAGAC ATGGTGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60744923	NES16383388	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46750842					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744923	NES16383388	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65052039 () rs orientation: forward

Symbol	Name	Function Class
Akr1cl	aldo-keto reductase family 1, member C-like	198 bp downstream