rs46753202 SNP Detail

Summary

• ID
  rs46753202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135766715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCACGTTG CTTCTACCGA TCTTGAGTTT
  GTCACACTGG GGGCTTATAC TCCCCCTTGC CCTGTTTTTT TTTTTTTTTT TTGGTCAGGA
  AATTATATTG CAAAGAACAA GGGGCATTGT CAACATTTCA GTCAATGTGC CTATTGTCTT
  Y
  GGGCCAGGCA CTGAGATGCC TTCAGGACTT GGGTTATAAT AAAACGGGGT GAATTTGTAC
  ACCAGGTCAG GCTACAGCAC TATCTCTAAT CTTGACATTC TGTTTCATAC ACCACAGGGG
  AGGAGATATT TCCCAAAGGG AATTATGTTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145548085	ENSMUSSNP1702819	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss319993853	CHEV_1_137735554	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46753202					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135766715 () rs orientation: forward

Symbol	Name	Function Class
Rr419296	regulatory region 419296	1392 bp distal
Rr419297	regulatory region 419297	within coordinates
Rr419298	regulatory region 419298	1631 bp proximal
Rr419299	regulatory region 419299	1909 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9006	transcription start site region 9006	554 bp downstream
Tssr9007	transcription start site region 9007	66 bp downstream
Tssr9008	transcription start site region 9008	1694 bp upstream
Tssr9009	transcription start site region 9009	1880 bp upstream
Tssr13887	transcription start site region 13887	1929 bp downstream