rs46753378 SNP Detail

Summary

• ID
  rs46753378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90694772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAATATGT AAGCTTGACT
  AATAGAGAGT AGGGAGATAT ATATATTTTT TTCTGGTCTG TACCCTGCAG TCTTCAGATG
  ACGATGGAAT CACAAAGGTC AAAGTTAGTA ATGACTGAAA TGTGAGCCTT CTAACTGTGT
  TTTAGTCTCT CTGGTCATTC ATTGTTTTTT CTTTCCCTCA TGATGCCTTA CCTTGAAGAG
  Y
  AAGTGCTTCT GGGCTCATTT ATCATCTCGA GGCGATCTTT GCAGCAATGG TCTCAGGCAG
  CACTTTATTA CCTGTGTTCT GAAGAATTCT CGTCTTAAGT GATGATCCAG GAGACGAGCA
  CTTCTGCTGC TGGAAGGGTG CTGCACACTA CATTCTTTCT AGGTTGGTTC TAGCCCATGT
  TCATGTTCTA AAGATCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132592505	ENSMUSSNP6574851	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46753378					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90694772 () rs orientation: forward

Symbol	Name	Function Class
4930405D11Rik	RIKEN cDNA 4930405D11 gene	746 bp upstream
Rr237710	regulatory region 237710	829 bp proximal
Rr253892	regulatory region 253892	748 bp distal
Tssr104130	transcription start site region 104130	736 bp upstream