rs46753542 SNP Detail

Summary

• ID
  rs46753542
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106105641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGTTCAG CTGATTGTCT AAGTCCAGTA CATGACTCCT
  TAGCTCCCAG ATCCATTGAC TATACATGGT TTCCAGTTTG CTCATGGCTA TGACCTCTTG
  A
  GTGTTCCTGA AACTGAAAAT GAAGTTTTCA TTGACAAGAG CTTTCCACAA ATCTTGTACT
  CTGAATTTAA AATCTGAGAT TTTTAAGATC CTTCCCCTA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145614857	ENSMUSSNP6814368	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46753542					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106105641 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74129	transcription start site region 74129	1479 bp upstream
Tssr74130	transcription start site region 74130	1430 bp upstream
Tssr74131	transcription start site region 74131	1219 bp upstream
Tssr74132	transcription start site region 74132	1043 bp upstream
Tssr74133	transcription start site region 74133	386 bp upstream
Tssr74134	transcription start site region 74134	131 bp upstream
Tssr74135	transcription start site region 74135	51 bp upstream
Tssr74136	transcription start site region 74136	5 bp upstream
Tssr74137	transcription start site region 74137	50 bp downstream
Tssr74138	transcription start site region 74138	80 bp downstream
Tssr74139	transcription start site region 74139	114 bp downstream
Tssr74140	transcription start site region 74140	169 bp downstream
Tssr74141	transcription start site region 74141	569 bp downstream
Tssr74142	transcription start site region 74142	712 bp downstream