rs46755510 SNP Detail

Summary

• ID
  rs46755510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117694283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG AGAGGCAAAA GGTTAGAGAG
  Y
  GGGTGATAGG ATTGGTTAGG GACTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147294734	ENSMUSSNP3117730	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321280577	CHEV_4_117509691	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46755510					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117694283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14668	CpG island 14668	331 bp distal
Gm17114	predicted gene 17114	within coordinates
Rr598225	regulatory region 598225	1679 bp distal
Rr598226	regulatory region 598226	within coordinates
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	within coordinates
Tssr38631	transcription start site region 38631	1811 bp downstream
Tssr38632	transcription start site region 38632	1785 bp downstream
Tssr38633	transcription start site region 38633	1753 bp downstream
Tssr38634	transcription start site region 38634	1737 bp downstream
Tssr38635	transcription start site region 38635	1658 bp downstream
Tssr42994	transcription start site region 42994	1239 bp upstream