rs46756026 SNP Detail

Summary

• ID
  rs46756026
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63404369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGCTCA AGTTACAGCT
  GTGATCTACC ACACCCAAGG TGAGCAGCTC TTTGCAAAGC TCACTGTTAC CATGCCCCAC
  AAATTGCTTC GCAGCATTTC TCAACTTATG GGTCCTGACC CCTTTGGGAG TCAATGACCC
  TTTCACAGGA GTTGCTGAAC ACCGTTGAAA AAGCAGAGAT TTACATTTAC AATTCCTAAC
  M
  GTAGAAAAAT TACAGTTATG AAATAGCGAA ATAATGTTAT GGTTGGGGGT CAGCACAACA
  TGAGGAGCTG TATTAAAGGG TCACAACATT AGGAAGGTCG GGACCCACTG GTCTAGCGTC
  TGCTCTCAAG GTATGCAAAG GGACAATGGC CCTGGGTTTG AAGAACAGGC TTAGGGGAGC
  ACTCTCCACC CCAACACCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss139623581	ENSMUSSNP1782875	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46756026					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63404369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6599	CpG island 6599	1906 bp distal
Fdft1	farnesyl diphosphate farnesyl transferase 1	within coordinates
Gm53861	predicted gene, 53861	within coordinates
Gm62779	predicted gene, 62779	1386 bp upstream
Rr297363	regulatory region 297363	1368 bp distal
Tssr129159	transcription start site region 129159	1979 bp upstream
Tssr129160	transcription start site region 129160	1958 bp upstream
Tssr129161	transcription start site region 129161	1940 bp upstream