rs46756076 SNP Detail

Summary

• ID
  rs46756076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGAGGAA GCTGGGTTTC
  TTTCTCACGC CTCTAATTTT TCATTGGACA GCAGTGGCCA ATTTCAGATT CACTTTAGAC
  TCTGGCTGAC CTGCTGGGAG AGCAGGTGTG AGGCCACTGG GTTCCCAGAG CATCCTAGTA
  GGAAGTCTAG GAGCCCCAGC CTAGACCAGA CCAGGTCTAT CCAAGACAAC CAGCGAATGC
  Y
  CTCTCTCCAG CCCTGCGTCC TGGTCCATCA TGACCTGAGT ATGTGTTTGA GTATGAGCGT
  CTTTTGTGAC CATCAGTGAC TGAGAGTGTC TGCTGCAGGG TGGGTACAGA TACAGACAGC
  ACTGAGCGCA CGGGTAGATG TTTCTACACG CGGGACTGCC AATGACTGTC CATCCCAGCA
  GCTGCACTCC ACTTCCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52651850	NES15472013	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	T		C
ss324417487	CHEV_13_70981447	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46756076					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651850	NES15472013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990688 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	758 bp upstream
Cpgi5821	CpG island 5821	729 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482301	regulatory region 482301	1909 bp distal
Rr482302	regulatory region 482302	1859 bp distal
Rr482303	regulatory region 482303	826 bp distal
Rr482304	regulatory region 482304	268 bp distal
Tssr123158	transcription start site region 123158	853 bp upstream
Tssr123159	transcription start site region 123159	815 bp upstream
Tssr123160	transcription start site region 123160	786 bp upstream
Tssr123161	transcription start site region 123161	759 bp upstream