rs46756423 SNP Detail

Summary

• ID
  rs46756423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTGCA AGGAGGGGAC
  CAGTTGGAAT GAATGAGCCA GGATCAGAGC CGGGGCGGGG CGAAGAGAAG CGCACAGCCT
  TGAATGCTAG CTTTGGGCGC GCACGGGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GGGGTGATGA TGGCAAGACC CCAGCCCAAG AGGTCTTTGC CTTTGGATAT
  Y
  AGAATTTCCC TGGCGAGCTG CAAGGAAGAG TGGAAGAGAT TTGGGTGCTT CCCGAGAGGA
  GGGAAGGAAA CCTGTAGCTT GGAGCAAGAG TTTCCAAACT ATCTGGACTA TCACTGGCAT
  TTTTATTTTG CCTGTGGCCT TGGAGGCGCC CCTCGCCTCT TGAGGCTGCA GTTGGCATGA
  TGATCATTTC TGTGGTAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147119780	ENSMUSSNP4873475	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320439906	CHEV_2_102499945	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46756423					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	33 bp distal
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1119 bp distal
Rr561714	regulatory region 561714	976 bp distal
Rr561715	regulatory region 561715	497 bp distal
Rr561716	regulatory region 561716	within coordinates
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1549 bp downstream
Tssr19099	transcription start site region 19099	1477 bp downstream
Tssr19100	transcription start site region 19100	1208 bp downstream
Tssr19101	transcription start site region 19101	1119 bp downstream
Tssr19102	transcription start site region 19102	1093 bp downstream
Tssr19103	transcription start site region 19103	1046 bp downstream
Tssr19104	transcription start site region 19104	1024 bp downstream
Tssr19105	transcription start site region 19105	954 bp downstream
Tssr19106	transcription start site region 19106	936 bp downstream
Tssr19107	transcription start site region 19107	916 bp downstream
Tssr19108	transcription start site region 19108	880 bp downstream
Tssr19109	transcription start site region 19109	838 bp downstream
Tssr19110	transcription start site region 19110	556 bp downstream