rs46756450 SNP Detail

Summary

• ID
  rs46756450
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124674589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACACACA CACACACACA
  CACACACACA CACACACATC ACTGTGTGTC TCTGGTTGCT TTGGAACTAT ATAGCCAAGA
  CTAGCTCTGA TCCAGGGTCC TCCTACCTTA GCTTTCCATG TGCTAGGATT TTAAGTTGTG
  TACTACCATG TCCAGCAATA CCTTTTAAAA TAATTTTAAG GCAATAGTTG TCAGGTACTT
  W
  TGAGATTAAT TTACTGGTTT TTTTGTTTGT TTTGAGCAAA AATGATGTAT CAGAACATAT
  ATGCATCTTA CTATCTTTTT AACCCATCAT ATATACATAT ATGTGTGTGT GTGTATATAT
  GTGTATATAT ATATATATGA TTGTATGATA GATAGATAGA TATCGAAAAG CAAGTGCTCT
  TATCCCCAGA GCCATCTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145836485	ENSMUSSNP5727876	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46756450					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124674589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	892 bp proximal
Gm45890	predicted gene 45890	940 bp upstream
Nup133	nucleoporin 133	within coordinates
Rr672577	regulatory region 672577	850 bp proximal
Rr672578	regulatory region 672578	1405 bp proximal
Rr672579	regulatory region 672579	1425 bp proximal
Rr672580	regulatory region 672580	1593 bp proximal
Tssr80007	transcription start site region 80007	1560 bp upstream
Tssr80008	transcription start site region 80008	1596 bp upstream
Tssr83414	transcription start site region 83414	1351 bp downstream