rs46757684 SNP Detail

Summary

• ID
  rs46757684
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51444696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGTTTCA AAGTCACTAA
  TATTCGATCT AACTTCTAAT TCACGTAAAC TTTCTTAGAT TTTCTTCAAA AAAATTCAGA
  AAAACCATAC CCAGCTCTTA GGTCATTTAA AGGGTATTAA AGAATTCTTT TGTAATTCAT
  TAAATTCTAC AACCCAAGTC CAAAATTTAC TACTTTTTAG ATTTAAAAAA AATTTAAAAA
  M
  CCTGTTTCCA AATTCACCAC TTCCAAGATT CAGTTTCTGA AAAGTGGCAT ATTTGCTTTT
  CCCTGAGCTG CCCCCTCTGG TGTTAATTGT AAGTATCTCA AGATGAAAAA AAAAAATCCT
  GCAACTCTGA AACAAGCTCC ATGAAGAATG CTGAAACTCC AGATATCACC TTAAATCTGG
  TTTTGTCAGG CACTTAATAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133189236	ENSMUSSNP734147	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46757684					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51444696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17402	CpG island 17402	1129 bp proximal
Gm67572	predicted gene, 67572	1714 bp upstream
Hnrnpa2b1	heterogeneous nuclear ribonucleoprotein A2/B1	within coordinates
Rr379347	regulatory region 379347	599 bp upstream
Rr630212	regulatory region 630212	within coordinates
Rr630213	regulatory region 630213	1224 bp proximal
Tssr56443	transcription start site region 56443	1712 bp upstream
Tssr60939	transcription start site region 60939	1491 bp upstream
Tssr60940	transcription start site region 60940	1312 bp upstream
Tssr60941	transcription start site region 60941	1028 bp upstream
Tssr60942	transcription start site region 60942	881 bp upstream
Tssr60943	transcription start site region 60943	771 bp upstream
Tssr60944	transcription start site region 60944	724 bp upstream
Tssr60945	transcription start site region 60945	103 bp downstream
Tssr60946	transcription start site region 60946	735 bp downstream