rs46758125 SNP Detail

Summary

• ID
  rs46758125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCTGTC ACCACTCAGC
  ACTAGGTGTT GGGCGAAGAA AGGTTGGTTA GCCGGAAGTG ACAGGTGAGG AGGCTTCTGG
  ACGGCTTGTG CGCAGGGTGG CAGCATCCCG AGGAAGGTTC CAATCCTGTC TGGCTGGACT
  CTCATCCGCT CCCCACGCCT CGGGTTGAGC AGAGAGTAGC CACTGCCTCC CAAGGCCCGA
  R
  ATCAGGCGCA CATTCTTAGG GTCCCCAACG AGTCCTCCAA CTGCCTGCTG GTCCACCACC
  CCACAGCAGC TCTTAATCTG GAACCGACCC AGTTCCTTTC TTCTCAAAGC CCAGCTCCCG
  GGTCACATGC CATCTAGAGC TGCCTCTTGT TGGAGAAGGT GCGGTCGCCC CGGGTGCCCG
  GCGACTCAAA CCCGGTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135871343	ENSMUSSNP1989763	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46758125					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	within coordinates
Cpgi13801	CpG island 13801	964 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65064	predicted gene, 65064	1881 bp downstream
Gm65225	predicted gene, 65225	719 bp downstream
Rr584859	regulatory region 584859	1360 bp distal
Rr584860	regulatory region 584860	within coordinates
Rr584861	regulatory region 584861	124 bp proximal
Rr584862	regulatory region 584862	249 bp proximal
Rr584863	regulatory region 584863	573 bp proximal
Rr584864	regulatory region 584864	1141 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	472 bp downstream
Tssr31595	transcription start site region 31595	460 bp downstream
Tssr31596	transcription start site region 31596	427 bp downstream
Tssr31597	transcription start site region 31597	387 bp downstream
Tssr31598	transcription start site region 31598	364 bp downstream
Tssr31599	transcription start site region 31599	128 bp upstream
Tssr31600	transcription start site region 31600	192 bp upstream
Tssr31601	transcription start site region 31601	226 bp upstream
Tssr31602	transcription start site region 31602	267 bp upstream
Tssr31603	transcription start site region 31603	312 bp upstream
Tssr31604	transcription start site region 31604	429 bp upstream
Tssr31605	transcription start site region 31605	928 bp upstream
Tssr31606	transcription start site region 31606	1126 bp upstream
Tssr31607	transcription start site region 31607	1364 bp upstream
Tssr31608	transcription start site region 31608	1432 bp upstream
Tssr31609	transcription start site region 31609	1483 bp upstream
Tssr31610	transcription start site region 31610	1592 bp upstream
Tssr31611	transcription start site region 31611	1700 bp upstream
Tssr35598	transcription start site region 35598	68 bp downstream
Tssr35599	transcription start site region 35599	152 bp downstream
Tssr35600	transcription start site region 35600	169 bp downstream
Tssr35601	transcription start site region 35601	195 bp downstream
Tssr35602	transcription start site region 35602	527 bp downstream