rs46758827 SNP Detail

Summary

• ID
  rs46758827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80177105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGAGC TTCCAGGTGG
  GAGGTTTTCC TGAGTCATGG GACGCCAGAA CAGGAGCCCT GCTGAGGATC CAACCTCCAG
  GGGTTTAGAC TGGACAGCGC CGGGCAGCCA GCCGAACTCT GCTGTCCTCC GCGGGACTCC
  AGAGTCGAGC ATAGCCAGCG TGAGGCAGCA GTAGCCGATC CTGCGTGCCA TCAGGGCTTA
  Y
  GAGTCGCCTG GCAGCCAACA GGTATTCTCG GTGTGGGGCC AGTGGTGGGC ACGGACAGTG
  GCCTGGTGCC CATACATATT CTCGAGTACG CAGAGGCGTG CGGCTTTTGT AGATGAGCAA
  GACCCGCACT TCGTAGCGGG TCTCCTGGGC CTGGCGGTGG CGGCCCAGCA CACGGGCCTG
  GAACACTGTA CGACAGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61291166	NES16900979	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46758827					SNP	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291166	NES16900979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80177105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adamtsl5	ADAMTS-like 5			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Cpgi1873	CpG island 1873			within coordinates
Rr435196	regulatory region 435196			1007 bp distal
Rr435197	regulatory region 435197			911 bp distal
Rr435198	regulatory region 435198			462 bp proximal