rs46759004 SNP Detail

Summary

• ID
  rs46759004
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171180862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG ACAAAGTAGT CAGACAAGGC
  W
  ATAAACAACG AGACCAAACA AGGCG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119997766	PARCsnp_1.12960	PARC_SEQ	INBRED	f	SNP		T	A
ss119999697	PARCsnp_1.02117	PARC_SEQ	INBRED	f	SNP		T	A
ss146160851	ENSMUSSNP6511201	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320118187	CHEV_1_173283425	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46759004					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171180862 () rs orientation: forward

Symbol	Name	Function Class
Gm37154	predicted gene, 37154	832 bp upstream
Pfdn2	prefoldin 2	within coordinates