rs46760687 SNP Detail

Summary

• ID
  rs46760687
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCACTTT GAGGGTTGAG TGTGGTAGGC AGAGGTCCAT
  CCTGATTCTT ATTCACCTAT GTTATTATTA TTAGGCGATT TAAAACTCGA AGCTTCCCTC
  W
  ACGTCCAAAC TGCAAGGGCA GAGGGAAGGC GGGGCTTGGG GACCTTCCTG GTCTCTCTTC
  TGCGCCTGCA GCGTGGAGCC TCAGGCTGTA CCCTCTTAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136852123	ENSMUSSNP4929871	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323137458	CHEV_9_99777460	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46760687					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	571 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	317 bp downstream
Rr685463	regulatory region 685463	1313 bp distal
Rr685464	regulatory region 685464	882 bp distal
Rr685465	regulatory region 685465	381 bp distal
Rr685466	regulatory region 685466	742 bp proximal
Sox14	SRY (sex determining region Y)-box 14	871 bp upstream
Tssr91083	transcription start site region 91083	848 bp upstream
Tssr91084	transcription start site region 91084	829 bp upstream