rs46761328 SNP Detail

Summary

• ID
  rs46761328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20058412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACCC ATTAAGTACC
  TTAAGGAACA GAGTCTTAAG GTGGAACCTG TCCTGCACTT TGGCCCCCTT TGACATGTGT
  GTGTGTGTTT GAGATTCACC ATCTGTACCT GCAGGGCTTC AGTGTCCCAC CCTATGACAG
  ACCCATAACT AGTGCATCCC CAATATCAGG ACAGCAGGGC TGTGACCATC TATCTGTACA
  R
  TGTCTCCATG TGCCATTTTT ATTATGTTTT AAGTTTTCTT TTTAGTTATG TGTATGTGTG
  GGTATCTTGA GTGTGGATAT GTGCAGTGAG TGTGGATACC CCAGAGCCTT GAAGTTAAGA
  GACAATTGTG AGATGCCTGG CTTGAGTGCT GGAACTGAAC TCCCATCCCA TGGAAGAGCA
  GTGCACTCTC TTAATCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52600697	NES15697989	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46761328					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52600697	NES15697989	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20058412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8068	CpG island 8068	891 bp proximal
Gm49566	predicted gene, 49566	995 bp upstream
Map6d1	MAP6 domain containing 1	within coordinates
Rr512838	regulatory region 512838	1620 bp distal
Rr512839	regulatory region 512839	787 bp proximal
Rr512840	regulatory region 512840	1686 bp proximal
Tssr140349	transcription start site region 140349	1602 bp downstream
Tssr140350	transcription start site region 140350	1615 bp downstream
Tssr140351	transcription start site region 140351	1642 bp downstream