rs46761963 SNP Detail

Summary

• ID
  rs46761963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43812533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGACAG GAAACACCTT
  GATGTCTTTC CTCTTGGTAT TGGATGATAA CATGGGTTCC TCAATAAATA CATTTCTGAA
  CGAGCTATCC AAATAGAAAT ACATTTATTT ACTCTTTTAT ACCTCATCAA CTACCTAGCC
  ACCAGTACAT ATGATTGACC TGTCCAGGCT TGGGATCTTT CTCCTACAAA ATAGAACTAC
  Y
  GTCTTATTCT TTATAGTTTA TTTAGCTAGT ATAATAATTA CCCATTCTTC CATTTCAAAC
  TAGAAACTAT GAGTTTTTCA TAAACAGAAA ACTTGTTACG TGAGCTTAGA TCCAGTCAGG
  GCTCATTAGC TTCCTTAGAA AAAGTTAACT TTGGGCCTGG GGTGGTGGTT CAGCTGGTAA
  AACTGTTGGA CCTTGGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62740094	NES17341102	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46761963					SNP	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62740094	NES17341102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43812533 () rs orientation: forward

Symbol	Name	Function Class
Mep1a	meprin 1 alpha	within coordinates
Rr339847	regulatory region 339847	132 bp distal
Rr339848	regulatory region 339848	67 bp proximal
Rr339849	regulatory region 339849	867 bp proximal
Rr341637	regulatory region 341637	933 bp distal
Tssr148121	transcription start site region 148121	1075 bp downstream
Tssr148122	transcription start site region 148122	1153 bp downstream