rs46762614 SNP Detail

Summary

• ID
  rs46762614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112424252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCATTCT ATATCAAAAC
  AAATGTAAAG ACTAAGAGTG TAGTTCAGTA GTTGACCACT TATCTAGTAT ATAATGTTTG
  GGTTTAATCT CTGTACTACA AAAAAAAAGT ATTAATATAG CCATACGCAG AGGAAAAAAA
  GAAAACATTT CCAGCACTAT GTCTAAAATC AAATATCTGT TAGTTAAAAA GAAAAGGGAG
  Y
  TGCCATGATC AGTGACATAC AAAAAGCCAG GTGCTATCAC TCACCACCCA GGCTCTTGGA
  GGACAGATAG GAGAATCCTG GCTTCCTGCC AGCCAACCTA GGCACCCGGA CAAGGCCTGG
  GTGTCAGGGA GAGACTCTCT CTGGAAAAAA CAAGGAAGGT GATCCTGAAA AGAGATTCCT
  GATGGACCTG TGACATATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52696961	NES15533608	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46762614					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696961	NES15533608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112424252 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	733 bp upstream
Rr486330	regulatory region 486330	243 bp proximal
Rr486331	regulatory region 486331	1113 bp proximal
Tssr121099	transcription start site region 121099	778 bp upstream
Tssr121100	transcription start site region 121100	798 bp upstream
Tssr121101	transcription start site region 121101	862 bp upstream
Tssr121102	transcription start site region 121102	1072 bp upstream
Tssr124046	transcription start site region 124046	1430 bp downstream