rs46764734 SNP Detail

Summary

• ID
  rs46764734
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCATCA GATCCCAATA
  CAGATGGTTG TGAGCCACCA TGTGGTTGCT GGGAATTGAA CTCAAGACCT CTGGAAGAGC
  AGTCAGTGCT CTTAACCACT GAGCCATCTC TCCACCCCAA CACACCAGCT TCTAAAACCA
  TCTTTTCTTG TCTCAGATCT TTACATGCAA CAAATGCCCA TTAGTATTGC ATTAAGCTTG
  K
  TTTGTCACAG AATTAACATT GTGGCCTTGA AAGGTCACCA CACAGAATTA GACAGTGTCA
  GCCCAGTTCA CAATTATCTA TTGTCTACTA TTATAATTAT TATTATTATA TTATATATAA
  TATAGTATAT AATATGATAT AATATAAAAT GTAATATATA ATATAATATA TTATTATTAT
  ATTTATCTAT TATATCCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147541509	ENSMUSSNP667574	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321351218	CHEV_4_134773918	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46764734					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945314 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	114 bp distal
Rr86244	regulatory region 86244	1487 bp proximal
Tssr43955	transcription start site region 43955	1607 bp upstream
Tssr43956	transcription start site region 43956	1576 bp upstream
Tssr43957	transcription start site region 43957	1326 bp upstream
Tssr43958	transcription start site region 43958	1190 bp upstream
Tssr43959	transcription start site region 43959	1169 bp upstream
Tssr43960	transcription start site region 43960	1017 bp upstream
Tssr43961	transcription start site region 43961	958 bp upstream
Tssr43962	transcription start site region 43962	912 bp upstream
Tssr43963	transcription start site region 43963	853 bp upstream
Tssr43964	transcription start site region 43964	741 bp upstream
Tssr43965	transcription start site region 43965	609 bp downstream