rs46764991 SNP Detail

Summary

• ID
  rs46764991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119826198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG GCCCCGTGGT AGAAAGCGCC
  R
  GTACGCAGAC GCAGGCAGAT TAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61463919	NES16583244	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46764991					SNP	G	G	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61463919	NES16583244	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119826198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	754 bp distal
Cpgi16461	CpG island 16461	within coordinates
Gm71505	predicted gene, 71505	31 bp upstream
Rr619145	regulatory region 619145	1545 bp distal
Rr619146	regulatory region 619146	1634 bp distal
Rr619147	regulatory region 619147	1044 bp distal
Rr619148	regulatory region 619148	within coordinates
Rr619149	regulatory region 619149	42 bp proximal
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr48472	transcription start site region 48472	1268 bp downstream