rs46769164 SNP Detail

Summary

• ID
  rs46769164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAATAAA TGCAGTCCTG
  AGACAGAAAA ATGTGAACAT GAATTTTTAA ATAATTTCAC TTTGAACCTA CTGAGCAGGT
  TCTACTTGCG CAGTAGATAC AAGTACAGGT GAAATCCAGT TTATAGAAGA GAACACAGAG
  AAAATGGGGC TCCAGGAAGA GTGGACTAGA TCACAATCTG TTAGGAACTG AAGTTTGACC
  R
  GCCTTTCCAT ATGGAGATGT CCTTGCTGAA GGCCATGCCA TTCTCCCAAG CGGCAGGTAA
  GTTTAAAGAC TCAAAGATGC ATCTTCCTCA CTGTTGGAGA ACACAGAAGT GATCTATGTA
  CTGATAGATA GATAAGCTAG ACCCAAGGAT GTAGAAAGAA CAGGATGACA TAGTGACCAT
  TAAAGTCTCT TTATACAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936906	NES16189350	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46769164					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936906	NES16189350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259959 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	220 bp downstream
Tssr58809	transcription start site region 58809	392 bp upstream
Tssr58810	transcription start site region 58810	418 bp upstream
Tssr58811	transcription start site region 58811	454 bp upstream
Tssr63019	transcription start site region 63019	1428 bp upstream
Tssr63020	transcription start site region 63020	496 bp upstream
Tssr63021	transcription start site region 63021	418 bp upstream
Tssr63022	transcription start site region 63022	379 bp upstream
Tssr63023	transcription start site region 63023	324 bp upstream
Tssr63024	transcription start site region 63024	226 bp upstream
Tssr63025	transcription start site region 63025	194 bp upstream
Tssr63026	transcription start site region 63026	173 bp upstream
Tssr63027	transcription start site region 63027	135 bp upstream
Tssr63028	transcription start site region 63028	110 bp upstream
Tssr63029	transcription start site region 63029	82 bp upstream
Tssr63030	transcription start site region 63030	26 bp upstream
Tssr63031	transcription start site region 63031	within coordinates
Tssr63032	transcription start site region 63032	13 bp downstream
Tssr63033	transcription start site region 63033	38 bp downstream
Tssr63034	transcription start site region 63034	57 bp downstream
Tssr63035	transcription start site region 63035	78 bp downstream
Tssr63036	transcription start site region 63036	132 bp downstream
Tssr63037	transcription start site region 63037	162 bp downstream
Tssr63038	transcription start site region 63038	199 bp downstream
Tssr63039	transcription start site region 63039	258 bp downstream
Tssr63040	transcription start site region 63040	316 bp downstream
Tssr63041	transcription start site region 63041	365 bp downstream
Tssr63042	transcription start site region 63042	390 bp downstream
Tssr63043	transcription start site region 63043	400 bp downstream
Tssr63044	transcription start site region 63044	422 bp downstream
Tssr63045	transcription start site region 63045	513 bp downstream
Tssr63046	transcription start site region 63046	532 bp downstream
Tssr63047	transcription start site region 63047	555 bp downstream
Tssr63048	transcription start site region 63048	583 bp downstream
Tssr63049	transcription start site region 63049	598 bp downstream
Tssr63050	transcription start site region 63050	622 bp downstream
Tssr63051	transcription start site region 63051	674 bp downstream