rs46771710 SNP Detail

Summary

• ID
  rs46771710
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72020685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA CAAGCCTCTT CCTCCCTCTT
  T
  CTAAAATGGG GCTCAGAGGC AAGCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145150809	ENSMUSSNP5291076	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322704857	CHEV_8_74091940	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46771710					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72020685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	1318 bp proximal
Nxnl1	nucleoredoxin-like 1	1440 bp upstream
Rr665115	regulatory region 665115	351 bp proximal
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	841 bp upstream
Tssr77870	transcription start site region 77870	825 bp upstream
Tssr77871	transcription start site region 77871	916 bp upstream
Tssr77872	transcription start site region 77872	1616 bp upstream
Tssr81733	transcription start site region 81733	1429 bp upstream
Tssr81734	transcription start site region 81734	1415 bp upstream
Tssr81735	transcription start site region 81735	1409 bp upstream
Tssr81736	transcription start site region 81736	1401 bp upstream
Tssr81737	transcription start site region 81737	1389 bp upstream
Tssr81738	transcription start site region 81738	1422 bp downstream