rs46771934 SNP Detail

Summary

• ID
  rs46771934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAGTTCCA GGACAGCCAG GGCTACAGAG AAAAAAAAAG
  TCTGAAGAAA GAATTAAGAC AACAACAAAA ATAGCATGCT ACATAGGTAG CCGTCATTAC
  Y
  CTTGTATCCA TGACATCCAT CATTACCCAG GTATCTTCTG AGCTCTTTAA TAGCAACCAC
  AGTGTGGACT TAACACTTTG TATGTTCTGT TTGGTTTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147514295	ENSMUSSNP4717323	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46771934					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773270 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			1417 bp proximal
Gm75308	predicted gene, 75308			1343 bp upstream
Rr564422	regulatory region 564422			979 bp proximal
Rr564423	regulatory region 564423			1705 bp proximal
Rr564424	regulatory region 564424			1738 bp proximal
Rr564425	regulatory region 564425			1875 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Tssr26084	transcription start site region 26084			551 bp downstream
Tssr26085	transcription start site region 26085			1643 bp downstream
Tssr26086	transcription start site region 26086			1772 bp downstream
Tssr26087	transcription start site region 26087			1803 bp downstream
Tssr26088	transcription start site region 26088			1865 bp downstream
Tssr26089	transcription start site region 26089			1879 bp downstream