rs46772567 SNP Detail

Summary

• ID
  rs46772567
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7505718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT CCTCATACTA CATTCACCCA
  S
  TCACTCATTG AGCATTTACT ACAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52134653	NES15245539	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	G	C	C	C		C	C		G
ss146755457	ENSMUSSNP2157033	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss323244069	CHEV_10_7349752	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46772567					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52134653	NES15245539	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7505718 () rs orientation: forward

Symbol	Name	Function Class
Pcmt1	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	within coordinates
Rr220299	regulatory region 220299	118 bp distal
Rr220302	regulatory region 220302	83 bp proximal
Rr228712	regulatory region 228712	1483 bp proximal
Tssr92302	transcription start site region 92302	619 bp downstream