rs46773496 SNP Detail

Summary

• ID
  rs46773496
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5858352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTACCTC CCCACTAGAG
  GAGAGGTCCC AGAAGGCAGA GCCTTTCTCT CATCTGCCTG TTGTGTGTTG GGGCCCACCA
  CAGTGAAGGC TATCCTGAGC ATCAGATACT ACACTTTTTT AAGGCACAAA GGAGTATGAA
  TGCATGTCGT TTTGTTGTTG GTTGTGTTTT AGGGAAGGGA AATGCTACAT TTATCTTTGT
  W
  GACTGTTGGC AAGAAGATTG ATGCCTACAC AGTTGGTGCT GTGGATTCTG TAACCTCAGT
  TTCAACCAGT TGCAGGTGGG AAGTATTAGG GTGAGGTGGG AAGTGTACCT CTGTTGAACC
  TAAGTGCTTC TGTTCTTCAT TATTCCCTAA GCAATACTGT ATAATGTCTG GATAGCATAT
  ACATTATGTT AAGTATCGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146275396	ENSMUSSNP4811336	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46773496					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5858352 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Rr49685	regulatory region 49685	552 bp distal
Tssr16009	transcription start site region 16009	684 bp downstream