rs46773645 SNP Detail

Summary

• ID
  rs46773645
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:71955935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG TGATAACTCC ACCGGACTCC
  K
  GGAAGCCCTG CTGTGCGGCC TTTAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61019290	NES16107376	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46773645					SNP	G	G	G	G	G	G	G	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61019290	NES16107376	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:71955935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19258	CpG island 19258	141 bp proximal
Gm39035	predicted gene, 39035	722 bp upstream
Mctp2	multiple C2 domains, transmembrane 2	within coordinates
Rr165673	regulatory region 165673	1857 bp proximal
Rr167990	regulatory region 167990	within coordinates
Rr171628	regulatory region 171628	1535 bp distal
Tssr67176	transcription start site region 67176	687 bp upstream
Tssr72929	transcription start site region 72929	413 bp downstream
Tssr72930	transcription start site region 72930	553 bp downstream