rs46775123 SNP Detail

Summary

• ID
  rs46775123
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18996768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAGATCT CTGAGTTCAA GGCCAGCCTG GCCTAAGGTG
  AGTTTCAGGA CAGCCAAGGC TACCCAGTGA AACCCTGTCT CCAAATAGCA CATAGGGCTG
  S
  CGAGATGGCT CAACGGGTAA GGGCACTCAC TGACTGCTCT TCTGAAGGTC CTGAGTTCAA
  ATCCCAGCAA CCACATGGTG GCTCACAACC ACCCATAAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148471688	ENSMUSSNP4567503	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322116777	CHEV_7_19848192	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46775123					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18996768 () rs orientation: forward

Symbol	Name	Function Class
Tssr70880	transcription start site region 70880	1900 bp upstream
Tssr70881	transcription start site region 70881	1836 bp upstream
Tssr70882	transcription start site region 70882	784 bp upstream
Tssr70883	transcription start site region 70883	1626 bp downstream
Tssr70884	transcription start site region 70884	1967 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates