rs46775913 SNP Detail

Summary

• ID
  rs46775913
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTTCCT TCTTACCCAC
  ATCTTCGAGG CAGGGTTTCT TTGTGAAACC TCGACTGACT TGGACCTCGA TCTGTAGACC
  AGGCTAGCCT GAAACTCACA GAGATCCACC TGTCTCTGCC TCTTGAGTGC TGGAATTAAA
  GTCATATGTC ACCACCACCT GGGAACAGTT TGCTTTGGGT TAAGAGTAAA CCCAAAACCC
  K
  GACATGGTGG CGCACGCCTT TAATCCCAGC ACTCGGGAGG CAGAGGCAGG CGGATTTCTG
  AGTTCGAGGC CAGCTGGTCT ACAAAGTGAA TTCCAGGACA GCCTGGGCTA ATAAAAAGAA
  ACCCTGTCTA GAAAAAAACA AAAAAAACAA AACAAAATAA CAAAAAAAAG TAAACCCAAA
  GAAGATGCAC ATTCTCACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144651912	ENSMUSSNP6950255	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46775913					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	470 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	829 bp upstream
Tssr114	transcription start site region 114	706 bp downstream
Tssr115	transcription start site region 115	722 bp downstream
Tssr116	transcription start site region 116	739 bp downstream
Tssr7298	transcription start site region 7298	801 bp upstream
Tssr12164	transcription start site region 12164	658 bp downstream
Tssr12165	transcription start site region 12165	682 bp downstream