rs46777984 SNP Detail

Summary

• ID
  rs46777984
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATACCAT TAAAACCCAG
  GGTTTTGTTG TTGTTGTTTT GTTTTGTTTT GAGACAGGGT TTCTCTGTGT AGCCCTGCTT
  GTTCTGGAAC TCACTCCATA GACCAGGCCG GCCTCAAATT CACAGAGATA CACTTGCCTT
  TGCCCTGAAA TAAAGGCCTT AAGTGACTTC TTGACCTGTA CTTCATTATC AAGAAATTAC
  K
  TGGTTTGATC AACACAAAAG CTAGAAGCTA CTGGTTGTGT TTCTGATTTC CAAAGCCCAG
  GGTAATCTTT TATGATTTTA TAAGTCAACA TTTTGAACCG GAGCCCATTG GAAAACTGAA
  AGAGCAAGAA GGCAGTTCAG CGGGACATGT CCTCTGAAGC CCCATGCTGA TGCTGTGCAG
  TTCACTTTGC TGATGCTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145954976	ENSMUSSNP3865777	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46777984					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642750 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	466 bp downstream
Cpgi13998	CpG island 13998	1075 bp proximal
Fam110b	family with sequence similarity 110, member B	1259 bp upstream
Tssr36378	transcription start site region 36378	1334 bp upstream
Tssr36379	transcription start site region 36379	1383 bp upstream
Tssr36380	transcription start site region 36380	1466 bp upstream
Tssr36381	transcription start site region 36381	1518 bp upstream