rs46780188 SNP Detail

Summary

• ID
  rs46780188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98761738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAG ACATCAGTCT ATGAGTATAA
  Y
  AGAATATCAT TACACAGAAT TTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135527771	ENSMUSSNP965753	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320845376	CHEV_3_98658345	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46780188					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98761738 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	629 bp proximal
Tssr30852	transcription start site region 30852	1856 bp downstream
Tssr30853	transcription start site region 30853	1691 bp downstream
Tssr34707	transcription start site region 34707	1460 bp upstream
Tssr34708	transcription start site region 34708	1279 bp upstream
Tssr34709	transcription start site region 34709	1132 bp upstream
Tssr34710	transcription start site region 34710	1075 bp upstream
Tssr34711	transcription start site region 34711	1644 bp downstream