rs46780236 SNP Detail

Summary

• ID
  rs46780236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:8358985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACGGTT TTGGGGTGGG
  TAAGGGTCTG ACAACAGGTA CTTCTCATTG GTTTGGTCTG AGAGTTTTGG GGAAACACTA
  TTTTCATGTG GGAGCGCTTG GTGCTGCTCC TATGTGACTG ATGGCCACAT ACCTCTCTGT
  GGGAGGCTGT GTAGCTATGT GACAGGAGTC AGGGACCCAT GAGGCGTGGC CAAACACCTG
  Y
  TGTTCATGTA AGTGGAAGTT ACCACCCATC AGGTCACCAG GGTTCGAGAC CTTTGCTCGA
  CTAGGGACCA GGTTGTCTGT GCACAGCCCA TTGCCCCACA ACTCCCCCGT TTTTCTTTTT
  AGAAGGGAGA GATGTCATCA GAATAACTGT CTTCTATGTT GGGAACAGTT TGACATTGAA
  ACGTGCTCTG ATTGGTAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60323323	NES15827061	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46780236					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60323323	NES15827061	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:8358985 () rs orientation: forward

Symbol	Name	Function Class
Gm70752	predicted gene, 70752	900 bp upstream
Rr407573	regulatory region 407573	1004 bp distal