rs46780988 SNP Detail

Summary

• ID
  rs46780988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65431924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG TCTCATAATC TCTGTTCATG
  Y
  TGCTGTTGGC CATGTTTTGA CCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137833736	ENSMUSSNP3301477	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46780988					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65431924 () rs orientation: forward

Symbol	Name	Function Class
Rr260997	regulatory region 260997	277 bp proximal
Rr267825	regulatory region 267825	1725 bp distal
Rr267826	regulatory region 267826	678 bp proximal
Rr387347	regulatory region 387347	88 bp upstream