rs46781017 SNP Detail

Summary

• ID
  rs46781017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16349631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT AGTCTCCCAA GTCAGCATCG
  R
  GCAAATGACA GCAAACCACA TGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322111626	CHEV_7_17201055	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46781017					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16349631 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	318 bp upstream
Cpgi18383	CpG island 18383	within coordinates
Gm29443	predicted gene 29443	within coordinates
Gm44589	predicted gene 44589	645 bp upstream
Rr400125	regulatory region 400125	30 bp downstream
Rr642706	regulatory region 642706	1872 bp distal
Rr642707	regulatory region 642707	724 bp distal
Rr642708	regulatory region 642708	223 bp distal
Rr642709	regulatory region 642709	597 bp distal
Rr642710	regulatory region 642710	1430 bp proximal
Rr642711	regulatory region 642711	1538 bp proximal
Tssr64615	transcription start site region 64615	86 bp downstream
Tssr70753	transcription start site region 70753	1100 bp upstream
Tssr70754	transcription start site region 70754	1083 bp upstream
Tssr70755	transcription start site region 70755	995 bp upstream
Tssr70756	transcription start site region 70756	918 bp upstream
Tssr70757	transcription start site region 70757	901 bp upstream
Tssr70758	transcription start site region 70758	846 bp upstream
Tssr70759	transcription start site region 70759	815 bp upstream
Tssr70760	transcription start site region 70760	685 bp upstream
Tssr70761	transcription start site region 70761	639 bp upstream
Tssr70762	transcription start site region 70762	568 bp upstream
Tssr70763	transcription start site region 70763	430 bp upstream