rs46781306 SNP Detail

Summary

• ID
  rs46781306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60693245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGCTTATT AAAAAAAGGG GGGAGGGGGA GTTCAAAGAT
  TCCCCAAGCA AGAAGCCCAA CAATGACCGT GGCTTCAGGA CACTCAAGTA AGATTTTGTT
  Y
  CAATCTAAGA ACTAGTTCCA GTGTTATAAA AACTGGTGGA AGCAGCAAAG GCCTTTAAGT
  ATGCTCAGTT TTTGAAAGCA GTTGACAGAC TGCCTATAAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63528646	NES17014248	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46781306					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63528646	NES17014248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60693245 () rs orientation: forward

Symbol	Name	Function Class
9930014A18Rik	RIKEN cDNA 9930014A18 gene	1569 bp upstream
Cpgi7129	CpG island 7129	1307 bp proximal
Lratd2	LRAT domain containing 1	within coordinates
Rr502991	regulatory region 502991	402 bp proximal
Rr502992	regulatory region 502992	886 bp proximal
Rr502993	regulatory region 502993	1652 bp proximal
Tssr131400	transcription start site region 131400	1551 bp upstream
Tssr131401	transcription start site region 131401	1583 bp upstream
Tssr134471	transcription start site region 134471	1676 bp upstream
Tssr134472	transcription start site region 134472	1539 bp upstream
Tssr134473	transcription start site region 134473	1217 bp upstream
Tssr134474	transcription start site region 134474	809 bp downstream