rs46781397 SNP Detail

Summary

• ID
  rs46781397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58009464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG AGAGCACGTT GTGCAGGGCT
  R
  GGCTATTAGC AGAAGGTAAA TAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147190411	ENSMUSSNP696834	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325635289	CHEV_18_58036046	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46781397					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58009464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10080	CpG island 10080	1335 bp proximal
Rr393751	regulatory region 393751	1056 bp upstream
Tssr5332	transcription start site region 5332	1899 bp upstream