rs46782537 SNP Detail

Summary

• ID
  rs46782537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48954604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTTTA TCTTGAAGGG
  TGTGTGTGTG TATGTGTGTG TGTGTGTGTG TATGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGCG TGTGTGCGCG CGCGCGCGCG CGCTCGCACA AGAAGCAGAG CTGAACTGAC
  TTATGTCCCC ATCCCTTCCA CCTATTAATT CCTGAGGCTT CTGCAGTTGC ACCTCAAGGG
  Y
  CATTTCCTTG GTGCAGAGCT GCGTTCTCCA GACAGGACTT GAGGCAGCGT GGTCTGCCTG
  CTGGATCCCT GCCCAGCATT GTGTTGTAGT CTCTTCGGAT GCACATGGGT GCTGCTCACT
  TGTGGTCTAG CTCATTTGGG GTTGGAAGGT GGGAACGTGC AGCCCCTCTT CTTATTTTTC
  CTCTCACAGT GTGGTAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61005703	NES16117344	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46782537					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61005703	NES16117344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48954604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	63 bp distal
Nav2	neuron navigator 2	within coordinates
Rr167850	regulatory region 167850	within coordinates
Tssr66792	transcription start site region 66792	968 bp downstream
Tssr66793	transcription start site region 66793	737 bp downstream
Tssr66794	transcription start site region 66794	578 bp downstream
Tssr66795	transcription start site region 66795	568 bp downstream