rs46783278 SNP Detail

Summary

• ID
  rs46783278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72345790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATA TTGTGCCAGC CAATGGGAGG
  Y
  CGCGTCCCTC TTGGGCGGGC GGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136621029	ENSMUSSNP1056478	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323002359	CHEV_9_72286315	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46783278					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72345790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	within coordinates
Mns1	meiosis-specific nuclear structural protein 1	within coordinates
Rr401506	regulatory region 401506	within coordinates
Rr682742	regulatory region 682742	within coordinates
Rr682743	regulatory region 682743	38 bp proximal
Rr682744	regulatory region 682744	1693 bp proximal
Tssr85997	transcription start site region 85997	492 bp downstream
Tssr85998	transcription start site region 85998	11 bp upstream
Tssr85999	transcription start site region 85999	26 bp upstream
Tssr86000	transcription start site region 86000	71 bp upstream
Tssr86001	transcription start site region 86001	101 bp upstream
Tssr86002	transcription start site region 86002	335 bp upstream