rs46784406 SNP Detail

Summary

• ID
  rs46784406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46856894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCAGAA GAAAGGAGGA
  GTCATATAAG ATGTGAACTT CTGTGTGGAT GGGATTCACT TAGCATGGAA GGAAGGCTAG
  GCGATAACCA TTGATGCTCT TATAGCTGTT GACAAACATG GGGCCAAGCC AAACCATCTT
  CTAGGCCTGG GGGGCGGGGA TGGCATAGGG AGGGCCTAAA CCAGAAGCTC TAAATAGGGG
  Y
  GTGAAGGTGA CGCCTGACTG CCGGGACTGA GAACAGAAAG CAGCACGATC GCGTCCAAGC
  TAGACTCCAG AGAGGTGGCG GAGGAGCCCG CTCAACACCA AGCGGGGAAT AATGGCCTGG
  GGGAGCGGGG CGGCGCGGGG TGAGCATGGC GGGGCGCGGT CGCGAGCTGA CAGGACCTGC
  TTCCCCGACT TCTCCCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62759003	NES17342664	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46784406					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62759003	NES17342664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46856894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	within coordinates
Cul9	cullin 9	within coordinates
Rr527757	regulatory region 527757	within coordinates
Rr527758	regulatory region 527758	410 bp proximal
Rr527759	regulatory region 527759	956 bp proximal
Tssr148330	transcription start site region 148330	307 bp downstream