rs46785253 SNP Detail

Summary

• ID
  rs46785253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128552353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAAATTTT CCTGGAGTGG ATGGGATGGG GCATGCATTT
  TAGAGAAAGC AGCAGCAGCC TCAGGGCCTG GGGGGAGACT GGCATCAATT CTAAACATCT
  R
  TTCATTTAGT GTTAGGGTGT AATTTTATGT TTGGGGGGGA CGGACGGACA ATGTGCTATA
  CACAGTTAAA TGCAAGCCAA AACTCGACTG AGGCAGAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147568441	ENSMUSSNP2454556	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46785253					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128552353 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	1190 bp distal
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	1303 bp distal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr1768	regulatory region 1768	1742 bp upstream
Rr58326	regulatory region 58326	within coordinates
Tssr20064	transcription start site region 20064	1699 bp downstream
Tssr20065	transcription start site region 20065	1650 bp downstream
Tssr20066	transcription start site region 20066	1368 bp downstream
Tssr20067	transcription start site region 20067	1326 bp downstream